Deus Ex Achievement Order

Very First room in the game:
Old School Gamer

First Mission at the end of it:
Unforeseen Consequence

Detroit - First Time
Balls - Can also be gotten on second time in Detroit
Lesser Evil
The Desk Job
Sentimental Value - Missable part of Motherly Ties
Motherly Ties
The Take - Missable part of Cloak & Daggers
Cloak & Daggers
Yes Boss

Mission you get sent on at Fema:
The Bull

China (For a mission you get sent on at Tai Yong Medical you need the Safe Falling Aug to get one of the XP books):

The Fall - Missable part of Rotten Business
Rotten Business
Darker Shades
Guardian Angel - Missable Part of Bar Tab (Have 5000 credits ready)
Bar Tab
Super Sleuth - Missable part of Shanghai Justice
Shanghai Justice

Mission you get sent on at News building Picus:
The Mantis

Detroit Part 2:
The Throwdown
Lucky Guess - Missable part of Smash the State
Smash the State
The Last Straw
Kevorkian Complex - Missable part of Acquaintances Forgotten
Acquaintances Forgotten

China Part 2 (Make sure you have Speech Aug for this part):
Good Soul
Talion A.D.
Ladies Man - Missable part of Corporate Warfare (Requires the speech Aug)
Corporate Warfare

Mission you get sent on next:
The Snake

Just after the above boss fight after the scientist are picked up by the chopper (not sure what happens if you didn't save Malik). Requires level 5 hacking or the Instant Hack items (No sure if they were a pre-order item, I think they were):
Doctorate - last one is in the white room
Hangar 18

The Final Countdown

Make sure you go talk to the 2 guys that talk to you asking for help before using the end lift or you won't be able to get all the endings. The lift gives you a warning that you won't be able to go back

The End

Make a save just after the woman gives you all the options for your ending. You will need this for reloading to get each of the different endings

Complete game on hardest without alarms or kills and watch all credits with reload to get:
Trooper
Legend
Pacifist
Foxiest of the Hounds
The D Project
Deus Ex Machina

Misc:

First Takedown
Ghost
First Hack
Transhumanist
Up the Ante!
Hax0r1!
Opportunist
Gun Nut
Consciousness is Over-rated